rs228590 chr11:108225414 A>G
- Sequence
gtcagaagaaccaccagtgaatat[A/G]aaaggagaagagaatcagagccat
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) periferal blood macrophages
- ASB for transcription factors
- SPI1_HUMAN FOXK2_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.10 | 1.46 | 2.05 | -0.42 | Weak Discordant | |||
| FOXK2_HUMAN | -1.68 | 1.71 | 1.67 | n/a | n/a | |||
| KDM1A_HUMAN | -0.29 | 1.91 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood