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rs228871 chr17:66502812 A>G

Sequence
gggattacagttgcattccaccac[A/G]cctggctaatttttttttttgtat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ZFX_HUMAN PKNX1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN -1.78 1.90 1.006.1·10-3 1.50 n/a No Hit
PKNX1_HUMAN -1.71 1.92 1.000.05 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia Brain_Nucleus_accumbens_basal_ganglia

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