rs2290194 chr3:13496554 C>T
- Sequence
gctctttactgagcccagagcttg[C/T]caggagcctggtagggttgtggct
- ASB in cell types
- T47D (invasive ductal carcinoma) A549 (lung carcinoma) HEK293 (embryonic kidney) breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN CTCF_HUMAN ESR1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.64 | -0.13 | 1.67 | n/a | No Hit | |||
| CTCF_HUMAN | 0.66 | 0.37 | 1.47 | n/a | No Hit | |||
| ESR1_HUMAN | 2.29 | -0.58 | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.35 | 0.61 | 1.85 | n/a | n/a |
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