rs2293617 chr12:103957357 C>T
- Sequence
ccgacactttctcagccccaggct[C/T]ccagcacctccatcactctcccta
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) H1 (embryonic stem cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- USF1_HUMAN EGR1_HUMAN GABPA_HUMAN E4F1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 1.13 | -0.59 | 1.41 | n/a | No Hit | |||
| EGR1_HUMAN | -1.16 | 2.25 | 2.25 | n/a | No Hit | |||
| GABPA_HUMAN | 0.97 | 0.33 | 1.55 | n/a | No Hit | |||
| E4F1_HUMAN | n/a | 2.31 | 2.00 | n/a | n/a | |||
| TAF1_HUMAN | 1.83 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid