rs2294335 chr6:166342642 G>C
- Sequence
gtagcaatgcgcgcatgctcacca[G/C]cctttctctcggacccggtagtgg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- GABPA_HUMAN CREB1_HUMAN FOXK2_HUMAN E4F1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.61 | 0.35 | 1.70 | n/a | No Hit | |||
| CREB1_HUMAN | 1.36 | -0.24 | 1.83 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.21 | 1.86 | 1.54 | n/a | n/a | |||
| E4F1_HUMAN | -0.60 | 2.71 | 1.42 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood