rs2301273 chr15:73994541 C>T
- Sequence
cccctgcagctctgccctacctct[C/T]ccgctttaccgtaagtcagcggta
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) Jurkat (T-cells) GM12878 (female B-cells)
- ASB for transcription factors
- SP2_HUMAN GABPA_HUMAN CTCF_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | -2.45 | 1.34 | 1.33 | -0.32 | Weak Discordant | |||
| GABPA_HUMAN | -0.40 | 1.85 | 1.36 | 6.19 | Concordant | |||
| CTCF_HUMAN | 0.20 | 0.78 | 1.10 | n/a | No Hit | |||
| ESR1_HUMAN | 2.06 | n/a | 2.50 | n/a | No Hit | |||
| KLF9_HUMAN | -2.22 | 2.01 | 1.50 | n/a | No Hit |
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Motif analysis
