rs230219 chr20:57222805 T>C
- Sequence
agccaggagacgaggaaacaggca[T/C]gtagccttcaggagcagcaagaaa
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- HIF1A_HUMAN HIF3A_HUMAN NFXL1_HUMAN NDF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIF1A_HUMAN | n/a | 3.17 | 1.50 | 6.58 | Concordant | |||
| HIF3A_HUMAN | n/a | 2.97 | 1.50 | n/a | n/a | |||
| NFXL1_HUMAN | n/a | 2.50 | 4.00 | n/a | n/a | |||
| NDF1_HUMAN | n/a | 2.31 | 4.00 | n/a | No Hit |
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Motif analysis
