rs230220 chr20:57222829 A>G
- Sequence
tgtagccttcaggagcagcaagaa[A/G]ctccagaggcttctggaagcttcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- NFXL1_HUMAN HIF1A_HUMAN P66B_HUMAN NDF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFXL1_HUMAN | n/a | 2.47 | 4.00 | n/a | n/a | |||
| HIF1A_HUMAN | n/a | 2.35 | 1.50 | n/a | No Hit | |||
| P66B_HUMAN | n/a | 2.45 | 4.00 | n/a | n/a | |||
| NDF1_HUMAN | n/a | 2.10 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Spinal_cord_cervical_c-1, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis