rs2302254 chr17:51153539 C>T
- Sequence
gcgagcggtgttctgcaaaatggg[C/T]tctccggcagcggatctgcgcaga
- ASB in cell types
- HepG2 (hepatoblastoma) SK-N-SH (neuroblastoma) germinal center B-cells HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- BCL6_HUMAN CREB1_HUMAN TF65_HUMAN ZKSC8_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | 1.95 | -0.68 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.14 | 0.22 | 1.85 | n/a | No Hit | |||
| TF65_HUMAN | 1.53 | n/a | 2.50 | n/a | No Hit | |||
| ZKSC8_HUMAN | 2.31 | -3.35 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood