rs2303756 chr19:57819644 T>C
- Sequence
ttactcagaaagctctgcgttgaa[T/C]gaatgccgtcagagccaatgaggg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) foreskin keratinocyte
- ASB for transcription factors
- PKNX1_HUMAN CTCF_HUMAN PBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 0.39 | n/a | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.73 | 0.41 | 1.46 | n/a | No Hit | |||
| PBX3_HUMAN | 1.11 | -1.21 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, cystatin c in serum, ldl cholesterol, parkinsons disease (pd), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood