rs2306124 chr1:155087375 A>G
- Sequence
acttttggagaccgtaaaacaaca[A/G]cgccccctcccttccagccctgag
- ASB in cell types
- HEK293 (embryonic kidney) GM23338
- ASB for transcription factors
- CTCF_HUMAN ZN189_HUMAN GLIS1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -3.41 | 2.78 | 1.33 | 2.41 | Concordant | |||
| ZN189_HUMAN | n/a | 3.10 | 2.00 | n/a | n/a | |||
| GLIS1_HUMAN | -1.97 | 2.04 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP birth weight, body mass index (bmi), parkinsons disease, primary rhegmatogenous retinal detachment, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Pancreas, Prostate, Spleen, Thyroid, Whole_Blood