rs234325 chr19:39997036 A>C
- Sequence
aggatcagtttccggctgtggact[A/C]catttcccagaagccccttgggca
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) HeLa S3 (cervical adenocarcinoma) CUTLL1 (T-cell lymphoblastic lymphoma 1)
- ASB for transcription factors
- FOXK2_HUMAN GABPA_HUMAN ZN143_HUMAN HCFC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.64 | -0.20 | 1.17 | n/a | n/a | |||
| GABPA_HUMAN | 1.41 | 0.18 | 1.33 | n/a | No Hit | |||
| ZN143_HUMAN | 1.63 | -1.04 | 1.92 | -4.32 | Concordant | |||
| HCFC1_HUMAN | 1.93 | -0.91 | 1.67 | n/a | n/a | |||
| NRF1_HUMAN | 1.20 | -0.84 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP fasting insulin, homa-b, homa-ir, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood