rs235006 chr20:49608821 C>T
- Sequence
ctctcctggactcagctatcacct[C/T]tgcagaaagggggcagtaacagga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) K562 (myelogenous leukemia) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.85 | 0.38 | 1.66 | 0.13 | Weak Discordant |
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Motif analysis
