ADASTRA v1.6.10
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rs235298
chr21:44875672
G
>
C
Sequence
gccgggtaccattggaacaccaag[G/C]taatttacttgtttgctcaattgg
ASB in cell types
foreskin keratinocyte
GM12878 (female B-cells)
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Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
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Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
foreskin keratinocyte
-3.25
2.05
1.00
1.3·10
-4
2.50
GM12878 (female B-cells)
0.46
0.28
0.02
0.63
1.28
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
lp-pla2 activity
GTEx eQTL
Artery_Tibial
,
Esophagus_Muscularis
,
Liver
,
Lung
,
Muscle_Skeletal
,
Ovary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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