ADASTRA v1.6.10
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rs236448
chr6:36735318
A
>
C
Sequence
acccatagacttaactctgaagtt[A/C]tgcaactgcttacaggaagatgcg
ASB in cell types
tibial nerve
upper lobe of left lung
CD14+ monocytes
gastroesophageal sphincter
ASB for transcription factors
EP300_HUMAN
CTCF_HUMAN
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN
1.60
-0.17
3.0·10
-10
1.00
1.42
n/a
n/a
CTCF_HUMAN
0.97
-0.24
1.7·10
-5
1.00
1.21
n/a
No Hit
STAT1_HUMAN
1.53
n/a
8.7·10
-3
1.00
2.50
n/a
No Hit
Items per page:
5
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Motif analysis
No data available
Genetic associations
GRASP
bipolar disorder
,
comorbid depressive syndrome and alcohol dependence
,
diastolic blood pressure (dbp)
,
height
,
sporadic creutzfeldt-jakob disease
,
systolic blood pressure (sbp)
,
total cholesterol
GTEx eQTL
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Skin_Not_Sun_Exposed_Suprapubic
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)