rs2393593 chr6:26285455 T>C
- Sequence
caaaaccttgcgatgacgcttagc[T/C]cctcccttacccaaaccttttcca
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MDA-MB-231 (breast adenocarcinoma) cranial neural crest cells
- ASB for transcription factors
- FOXK2_HUMAN SMCA4_HUMAN NRF1_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.72 | 2.18 | 2.44 | n/a | n/a | |||
| SMCA4_HUMAN | n/a | 2.76 | 2.83 | n/a | n/a | |||
| NRF1_HUMAN | n/a | 2.46 | 3.00 | n/a | No Hit | |||
| TAL1_HUMAN | -2.54 | 1.72 | 2.40 | n/a | No Hit | |||
| ZNF24_HUMAN | -2.72 | 2.70 | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 9
Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, hdl cholesterol, height, prop taste detection threshold, total cholesterol, years of education
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood