rs240218 chr6:80004368 G>A
- Sequence
atattcctctcactgggtaggttt[G/A]ctcgggagtggctacctcccaggc
- ASB in cell types
- K562 (myelogenous leukemia) thymus-derived CD34- cells GM12878 (female B-cells) LNCaP (prostate carcinoma)
- ASB for transcription factors
- BHE40_HUMAN BC11B_HUMAN GRHL2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 2.45 | -2.80 | 1.33 | n/a | No Hit | |||
| BC11B_HUMAN | n/a | 2.55 | 2.00 | n/a | n/a | |||
| GRHL2_HUMAN | 1.03 | 0.02 | 1.37 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.56 | -1.58 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Thyroid