rs240375 chr6:75284856 G>A
- Sequence
aaagtcggctggagacgccagagg[G/A]agggagagagggaggagggagaag
- ASB in cell types
- K562 (myelogenous leukemia) periferal blood macrophages pancreas VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.46 | 1.27 | -2.68 | Concordant | |||
| NRF1_HUMAN | 0.59 | -0.94 | 1.80 | n/a | No Hit | |||
| GABPA_HUMAN | -0.38 | 1.25 | 1.73 | 4.75 | Concordant |
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Motif analysis
