rs241771 chr17:28265920 T>C
- Sequence
ctgcctctcgaccctttttgtcta[T/C]ggaacccttccattgcctttcact
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- EMSY_HUMAN MAFG_HUMAN MAFK_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EMSY_HUMAN | 2.61 | n/a | 2.00 | n/a | n/a | |||
| MAFG_HUMAN | 2.56 | n/a | 2.00 | n/a | No Hit | |||
| MAFK_HUMAN | 3.27 | -2.06 | 2.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, coronary artery disease (cad), cystatin c in serum, ldl cholesterol, mitral annular calcium, systolic blood pressure (sbp), total cholesterol, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood