rs241785 chr17:28239219 A>T
- Sequence
caaggtcgtctagctatttatctt[A/T]cttctgtttctttccaactttttg
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN MTG16_HUMAN TAL1_HUMAN MTG8R_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | -0.01 | 1.79 | n/a | No Hit | |||
| MTG16_HUMAN | 3.02 | n/a | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 1.90 | n/a | 2.00 | n/a | No Hit | |||
| MTG8R_HUMAN | 2.06 | -1.74 | 2.00 | n/a | n/a | |||
| HTF4_HUMAN | 2.10 | -1.68 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood