rs2425236 chr20:36384156 G>C
- Sequence
cctttgagctgtgctgtttggggt[G/C]cggggcactcgtttgcctctgtcc
- ASB in cell types
- GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma) HCT-116 (colon carcinoma) cranial neural crest cells
- ASB for transcription factors
- COT1_HUMAN CTCF_HUMAN REST_HUMAN NR1H3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 1.95 | -2.11 | 1.67 | n/a | No Hit | |||
| CTCF_HUMAN | 0.18 | 1.04 | 1.66 | n/a | No Hit | |||
| REST_HUMAN | 0.99 | 1.29 | 1.33 | -1.09 | Weak Discordant | |||
| NR1H3_HUMAN | 1.43 | -0.61 | 1.50 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
