rs2425956 chr20:47540924 C>T
- Sequence
attttcagttagtgagattattta[C/T]tttacctttaaaatcatattaatg
- ASB in cell types
- LNCaP (prostate carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.19 | -0.08 | 1.43 | -2.29 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood