rs2426681 chr20:56788386 G>C
- Sequence
ctgcaacaaatatttacagaaggt[G/C]tctgcatgccagccttattctgag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) HepG2 (hepatoblastoma) LR-SK-BR-3 (lapatinib-resistant breast adenocarcinoma)
- ASB for transcription factors
- ERR1_HUMAN ESR1_HUMAN CREB1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERR1_HUMAN | 2.35 | -0.28 | 3.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.16 | -0.40 | 3.30 | n/a | No Hit | |||
| CREB1_HUMAN | 2.16 | -0.58 | 2.67 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.01 | 0.42 | 2.02 | n/a | No Hit | |||
| MNT_HUMAN | 1.43 | -0.15 | 2.56 | n/a | n/a |
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