rs2427622 chr20:64229627 A>G
- Sequence
actgcacttgtaattgcctagcat[A/G]tttaaacagatgcatatcaaagca
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ZN398_HUMAN SCRT2_HUMAN BC11A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.05 | 1.15 | 1.42 | -0.50 | Weak Discordant | |||
| ZN398_HUMAN | n/a | 3.12 | 2.00 | n/a | n/a | |||
| SCRT2_HUMAN | n/a | 2.42 | 2.00 | n/a | n/a | |||
| BC11A_HUMAN | n/a | 2.07 | 2.00 | n/a | No Hit | |||
| ZN629_HUMAN | -1.86 | 2.10 | 2.00 | n/a | n/a |
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Motif analysis
