ADASTRA v1.6.10
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Soos
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adastra.autosome.org
rs242793
chr20:60058718
A
>
G
Sequence
ttccggggcctcacagagaagctc[A/G]ggcaggtggagcctcagcaacagg
ASB in cell types
HEK293 (embryonic kidney)
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ZN692_HUMAN
PRD10_HUMAN
KAISO_HUMAN
Search SNPs nearby
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN692_HUMAN
n/a
2.60
1.00
3.1·10
-3
2.00
n/a
n/a
PRD10_HUMAN
-1.80
2.26
1.00
0.02
2.00
n/a
n/a
KAISO_HUMAN
2.01
n/a
0.04
1.00
2.50
n/a
No Hit
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP
total cholesterol change with statins
,
triglycerides change with statins
GTEx eQTL
Adipose_Visceral_Omentum
,
Muscle_Skeletal
,
Nerve_Tibial
,
Spleen
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)