rs2442797 chr3:11514461 C>T
- Sequence
aaggaactctggtgattttcccac[C/T]gggagagggagacatgagatgtgg
- ASB in cell types
- HEK293 (embryonic kidney) pancreas HepG2 (hepatoblastoma) gastroesophageal sphincter
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.63 | -1.62 | 1.40 | -5.12 | Concordant | |||
| RAD21_HUMAN | 2.03 | -1.96 | 1.50 | n/a | n/a |
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Motif analysis
