rs2448129 chr10:26684732 C>T
- Sequence
tctcatatgtatatacacacacca[C/T]acactgtatatgagagtatgtcat
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP C4-2B (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | -1.74 | 1.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Thyroid, Whole_Blood