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rs2449411 chr1:145726387 A>G

Sequence
aaatgtggcacatatacaccatgg[A/G]atactatgcagccataaaaaagga
ASB in cell types
HEK293 (embryonic kidney) K562 (myelogenous leukemia)
ASB for transcription factors
OZF_HUMAN KDM1A_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OZF_HUMAN 2.82 n/a 1.2·10-31.00 2.00 -7.80 Concordant
KDM1A_HUMAN 1.95 n/a 0.031.00 2.00 n/a n/a
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Motif analysis

OZF_HUMAN Concordant
OZF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Testis Thyroid Whole_Blood

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