rs2465131 chr1:1038819 C>T
- Sequence
gactgggagtcccagggccttgga[C/T]aaggcagggccaaagggagaggga
- ASB in cell types
- GM12878 (female B-cells) HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- IKZF1_HUMAN PRD10_HUMAN ATF7_HUMAN BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.50 | 1.52 | 1.33 | n/a | No Hit | |||
| PRD10_HUMAN | -1.72 | 2.07 | 1.67 | n/a | n/a | |||
| ATF7_HUMAN | -2.32 | 2.24 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | -1.77 | 1.93 | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | -1.60 | 1.84 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood