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rs2466411 chr6:39650665 A>G

Sequence
ttaaatatataatcattttcagat[A/G]accatctaaggaggcaactaaaat
ASB in cell types
LHSAR (prostate epithelial cells) LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.91 -0.00 0.010.80 1.54 n/a No Hit
ANDR_HUMAN 1.69 -0.42 0.021.00 1.42 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol
GTEx eQTL Adipose_Visceral_Omentum Adrenal_Gland Brain_Cerebellum Breast_Mammary_Tissue Colon_Transverse Esophagus_Muscularis Lung Nerve_Tibial Pancreas Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Testis Thyroid

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