rs247241 chr5:62431897 T>C
- Sequence
agaagttgcagtgagctgagattg[T/C]atcactgcactccagcctgggtga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF3_HUMAN CEBPB_HUMAN CEBPG_HUMAN RING2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | n/a | 2.92 | 2.00 | 4.11 | Concordant | |||
| CEBPB_HUMAN | -3.29 | 2.38 | 2.00 | 5.82 | Concordant | |||
| CEBPG_HUMAN | n/a | 2.07 | 2.00 | 5.60 | Concordant | |||
| RING2_HUMAN | 2.26 | -2.10 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid