rs2477136 chr1:17304426 C>T
- Sequence
tgcctagagggtatttggcaacac[C/T]cagaacacccttgcttcctctgcg
- ASB in cell types
- LHSAR (prostate epithelial cells) hMADS-3 (adipose-derived stem cells)
- ASB for transcription factors
- ANDR_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.48 | -0.75 | 1.60 | n/a | No Hit | |||
| PPARG_HUMAN | 1.55 | -1.16 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Spleen, Thyroid, Whole_Blood