rs247852 chr16:84511467 G>T
- Sequence
atcgcatcatgcatcctctgcaat[G/T]gttccttcctttccagggaggttg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells) epidermal keratinocytes
- ASB for transcription factors
- CTCF_HUMAN PRD10_HUMAN ETV1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.62 | 1.47 | n/a | No Hit | |||
| PRD10_HUMAN | 2.54 | n/a | 2.00 | n/a | n/a | |||
| ETV1_HUMAN | 1.77 | n/a | 2.50 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.59 | -3.41 | 2.67 | n/a | n/a | |||
| RAD21_HUMAN | 0.90 | -0.08 | 1.63 | n/a | n/a |
Items per page:
1 – 5 of 7