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rs2487681 chr1:3460779 T>C

Sequence
gcctgttgtgtctgccgctgtcct[T/C]gaccagtgatttggaatgtcctga
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
TEAD3_HUMAN SKI_HUMAN TEAD1_HUMAN SOX13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD3_HUMAN 2.30 n/a 4.8·10-71.00 1.33 n/a n/a
SKI_HUMAN 2.60 n/a 1.1·10-61.00 1.33 n/a n/a
TEAD1_HUMAN 2.63 -3.29 1.0·10-41.00 1.33 n/a No Hit
SOX13_HUMAN 2.34 -2.38 4.9·10-41.00 1.33 n/a n/a
BCL6_HUMAN 1.92 -1.95 8.3·10-31.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP parkinsons disease,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Ovary,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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