rs249496 chr5:102865886 C>G
- Sequence
tcacagcccctgtcattccggagt[C/G]ataaggcacccgcgcgtctagccc
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts HEK293T (embryonic kidney) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- GATA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | n/a | 2.16 | 2.00 | 4.97 | Concordant |
Items per page:
1 – 1 of 1
Motif analysis
Genetic associations
GRASP diabetic retinopathy in type 2 diabetes mellitus, height, ldl cholesterol, salmonella-induced pyroptosis, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood