rs2501425 chr1:23872849 A>C
- Sequence
attaatccctattacatgacatga[A/C]cctgcatatttcctttgttgtact
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MTG16_HUMAN KDM1A_HUMAN CEBPB_HUMAN ERR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | -3.49 | 2.64 | 1.50 | n/a | n/a | |||
| KDM1A_HUMAN | -1.37 | 2.20 | 1.33 | n/a | n/a | |||
| CEBPB_HUMAN | -1.87 | 1.67 | 1.33 | n/a | No Hit | |||
| ERR1_HUMAN | -2.10 | 2.16 | 1.33 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.12 | 1.70 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood