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rs2503713 chr1:2207868 C>T

Sequence
tcatggacttttccggccttgggt[C/T]gaggcctcagcgattcaggcgggg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KAISO_HUMAN ATF3_HUMAN GMEB1_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KAISO_HUMAN 1.21 -1.50 0.011.00 1.33 n/a No Hit
ATF3_HUMAN 1.81 -1.84 0.021.00 1.33 n/a No Hit
GMEB1_HUMAN 2.10 -1.84 0.021.00 1.33 n/a n/a
IKZF1_HUMAN 1.11 -0.92 0.051.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cortex Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Testis Thyroid Uterus Whole_Blood

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