rs250508 chr19:8269396 C>T
- Sequence
taagtgaaagtattaagccgttga[C/T]ctctccaagaaataatgacataag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HEK293 (embryonic kidney) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN KDM1A_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.54 | 0.99 | 1.67 | n/a | n/a | |||
| KDM1A_HUMAN | -1.45 | 1.50 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.64 | 1.19 | 1.17 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, maternal transmission distortion, pulmonary arterial hypertension (pah), triglycerides