rs250962 chr2:234082692 T>C
- Sequence
ctttcctgttttctatccctggaa[T/C]gtctcagtgtcgtctgacttgttg
- ASB in cell types
- LNCaP (prostate carcinoma) A549 (lung carcinoma) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN GCR_HUMAN EP300_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.01 | 1.60 | 1.98 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.19 | 1.36 | 1.91 | n/a | No Hit | |||
| GCR_HUMAN | -0.26 | 1.12 | 2.38 | n/a | No Hit | |||
| EP300_HUMAN | 0.04 | 0.81 | 2.06 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, fasting blood glucose, ldl cholesterol, rheumatoid arthritis, total cholesterol