rs2515029 chr8:118344227 T>C
- Sequence
cctatcctgctcaggttgaactaa[T/C]gtgggaaggttgacagtacaatgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) liver MDA-MB-453 (breast adenocarcinoma) foreskin keratinocyte
- ASB for transcription factors
- FOXA1_HUMAN ATF7_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.56 | 0.94 | 1.89 | n/a | No Hit | |||
| ATF7_HUMAN | -1.70 | 1.95 | 1.50 | n/a | n/a | |||
| REQU_HUMAN | -1.49 | 1.28 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), obsessive-compulsive disorder (ocd)