ADASTRA v1.6.10
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rs251850
chr19:53991509
T
>
C
Sequence
tccccttaaaacacccgggatccc[T/C]atggcaacaggcgccgggcgacag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
RFX1_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX1_HUMAN
-1.71
2.07
1.00
0.03
2.00
6.17
Concordant
Items per page:
5
1 – 1 of 1
Motif analysis
RFX1_HUMAN
Concordant
Show reverse complement
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Genetic associations
GRASP
comorbid depressive syndrome and alcohol dependence
,
parkinsons disease
,
psoriasis
GTEx eQTL
Colon_Transverse
,
Muscle_Skeletal
,
Pituitary
,
Spleen
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
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