rs2521795 chr16:19502819 A>G
- Sequence
gagcttcctaaaaagcctggaaaa[A/G]tgcaactctgccccctggtggttt
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.01 | 1.69 | 1.76 | n/a | n/a | |||
| SMC3_HUMAN | 0.03 | 1.54 | 1.78 | n/a | n/a | |||
| CTCF_HUMAN | 0.45 | 1.06 | 1.53 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.78 | 0.21 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood