rs2532234 chr17:46194900 A>G
- Sequence
acatctgcacctaggtttctgcga[A/G]tttccatttgtactcctaaaatca
- ASB in cell types
- Jurkat (T-cells) H929 (plasma cell myeloma) Th1-cells
- ASB for transcription factors
- TBX21_HUMAN MYB_HUMAN GABPA_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -0.87 | 1.64 | 1.33 | n/a | No Hit | |||
| MYB_HUMAN | 1.08 | 1.30 | 1.64 | n/a | No Hit | |||
| GABPA_HUMAN | -1.81 | 1.98 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.43 | 1.25 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, body mass index (bmi), diastolic blood pressure (dbp), height, ldl cholesterol, lung function, forced expiratory volume in 1 second (fev1), obesity (body mass index (bmi)), systolic blood pressure (sbp), triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood