rs253482 chr5:16897337 T>C
- Sequence
aaaaaaagtcctttatcagcatga[T/C]tcagaaactctgcaacgccaccac
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP (prostate carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GCR_HUMAN ZN394_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.42 | -0.20 | 1.48 | n/a | No Hit | |||
| GCR_HUMAN | -0.80 | 1.22 | 2.20 | n/a | No Hit | |||
| ZN394_HUMAN | n/a | 2.68 | 2.50 | n/a | No Hit |
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