rs253483 chr5:16897488 T>C
- Sequence
cccacgtaaaaatctgtgttgaag[T/C]gcataccttggcttttcaaagggc
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) HEK293T (embryonic kidney) LNCaP (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN EP300_HUMAN PBX3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.60 | 2.26 | 2.08 | n/a | No Hit | |||
| JUN_HUMAN | -0.71 | 1.71 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | -0.88 | 1.92 | 2.25 | n/a | n/a | |||
| PBX3_HUMAN | n/a | 2.50 | 2.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.02 | 1.17 | 1.40 | n/a | No Hit |
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