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rs253549 chr5:154279154 G>T

Sequence
aacagcagctgcaccattttgcat[G/T]tttactagcagtgcacaaaggttt
ASB in cell types
GM12878 (female B-cells)
ASB for transcription factors
IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN 1.41 -0.43 0.030.94 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi) ldl cholesterol total cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Lung Nerve_Tibial Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Thyroid

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