rs254415 chr5:77775879 G>T
- Sequence
cggcgcgcgcacacaggaggcacg[G/T]gatcagggcccggcccgccctcgc
- ASB in cell types
- GM12878 (female B-cells) MDA-MB-453 (breast adenocarcinoma) Tet21N (neuroblastoma)
- ASB for transcription factors
- BHE40_HUMAN MYCN_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 0.14 | 0.51 | 1.42 | 5.25 | Concordant | |||
| MYCN_HUMAN | -1.27 | 1.26 | 1.22 | 6.82 | Concordant | |||
| ANDR_HUMAN | 0.25 | 1.59 | 1.92 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary