rs254416 chr5:77775460 C>T
- Sequence
taaaacgtattacaccaagctgtg[C/T]cccaaccgccttgggcacatgtca
- ASB in cell types
- GM12878 (female B-cells) HCT-116 (colon carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells) | 0.77 | 0.48 | 1.28 | |||
| HCT-116 (colon carcinoma) | 1.37 | -0.45 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Pituitary