rs2546234 chr8:73208131 T>C
- Sequence
atacaccctacagtgtttgcccaa[T/C]gatgaaattgcctaacgacacatt
- ASB in cell types
- T47D (invasive ductal carcinoma) breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN PRGR_HUMAN HIF1A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.80 | -3.53 | 1.50 | 0.12 | Weak Discordant | |||
| PRGR_HUMAN | 2.14 | -2.04 | 1.50 | n/a | No Hit | |||
| HIF1A_HUMAN | 1.95 | -1.74 | 1.50 | n/a | No Hit | |||
| ESR1_HUMAN | 1.39 | -0.29 | 2.25 | n/a | No Hit |
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Motif analysis
