rs255306 chr5:173144415 T>G
- Sequence
agggaaagtcccaactctgcgcag[T/G]gaccctcgcttgccattttcgccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) foreskin keratinocyte HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN BHE40_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.78 | 0.72 | 1.59 | n/a | No Hit | |||
| SMC3_HUMAN | 0.01 | 1.00 | 1.87 | n/a | n/a | |||
| BHE40_HUMAN | -0.48 | 1.64 | 1.42 | n/a | No Hit | |||
| RAD21_HUMAN | 0.48 | 0.90 | 1.86 | n/a | n/a | |||
| NFXL1_HUMAN | n/a | 1.85 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood